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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LHX1, LIM homeobox 1
Sequence ID:NM_005568
Entrez Gene ID:3975
Ensembl ID:ENSG00000132130

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35295128 - 35298828

NM_005568 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111663529449835295663
116713933529758635297812
139416713529790635298183
167218373529949635299661
183822833530004835300493

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069180Full LengthBC101674LIM homeobox 1
8327404Full LengthBC111936LIM homeobox 1
3856037IncompleteBC020470LIM homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005559  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005568 NP_005559 P48742 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
U14755 AAA21644 P48742
BC020470 AAH20470 Q58F18
BC101674 AAI01675 P48742
BC111936 AAI11937 P48742
EU446486 ABZ92015  
AK298253 BAG60518 B4DPA6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LHX1 NP_005559 M.musculus Lhx1 16869 Gene Info NP_032524 100
R.norvegicus Lhx1 257634   NP_665887 100
A.gambiae AgaP_AGAP011134 1270792   XP_309513 60
D.melanogaster Lim1 31813   NP_572505 55
C.elegans lin-11 172893   NP_492696 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)