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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM5B, Lysine (K)-specific demethylase 5B
Sequence ID:NM_006618
Entrez Gene ID:10765
Ensembl ID:ENSG00000117139

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q32.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 202698446 - 202705364

 Exon Info From UCSC:
NM_006618

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063314Full LengthBC157031jumonji, AT rich interactive domain 1B
100062365BC156049jumonji, AT rich interactive domain 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006609  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006618 NP_006609 Q9UGL1 PHD
ARID
JmjC
JmjN
zf-C5HC2
PLU-1

Related Sequences

 
mRNAGenPeptSwissProt
AF087481 AAD16061 Q9UGL1
BC156049 AAI56050 Q9UGL1
BC157031 AAI57032  
AB015348 BAA34803 O94800
AK001400 BAG50904 B3KM92
AK022521 BAG51084 B3KMS2
AK022553 BAG51090 B3KMS8
AK122752 BAG53706 B3KV94
AJ132440 CAB43532 Q9UGL1
AL133040 CAB61368 Q9UFD3
AL133048 CAB61375 Q9UFC7
AL133072 CAB61395 Q9UIW7
AJ243706 CAB63108 Q9UGL1
AL137622 CAB70847 Q9NSZ7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM5B NP_006609 M.musculus Kdm5b 75605 Gene Info NP_690855 94
R.norvegicus Kdm5b 304809   NP_001100647 94
C.elegans rbr-2 177985   NP_502032 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)