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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL3A1, Collagen, type III, alpha 1
Sequence ID:NM_000090
RefSeqGene ID:NG_007404
Entrez Gene ID:1281
Ensembl ID:ENSG00000168542

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
EHLERS-DANLOS SYNDROME, TYPE IV 
EHLERS-DANLOS SYNDROME,TYPE IIITNXB

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 189841810 - 189843482

 Exon Info From UCSC:
NM_000090

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5405119Full LengthBC028178collagen, type III, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000081  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000090 NP_000081 P02461 VWC
Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
M13146 AAA52003 P02461
M11134 AAA52004 P02461
S79877 AAB35615 P02461
M59227 AAB59383 P02461
BC028178 AAH28178 P02461
X01655 CAA25821 P02461
X01742 CAA25878 Q6LBY7
X01742 CAA25879 P02461
X06700 CAA29886 P02461
X07240 CAA30229 P02461
X14420 CAA32583 P02461
X15332 CAA33387 P02461

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL3A1 NP_000081 M.musculus Col3a1 12825 Gene Info NP_034060 91
R.norvegicus Col3a1 84032   NP_114474 91
A.thaliana AT1G15830 838153   NP_173035 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)