Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC22A5, solute carrier family 22 (organic cation/carnitine transporter), member 5
Sequence ID:NM_003060
RefSeqGene ID:NG_008982
Entrez Gene ID:6584
Ensembl ID:ENSG00000197375

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CARNITINE DEFICIENCY, SYSTEMIC PRIMARY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 131705541 - 131729998

NM_003060 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1657131705400131706056
658761131714069131714172
762916131719838131719992
9171088131721019131721190
10891215131722716131722842
12161316131724612131724712
13171531131726381131726595
15321714131728124131728306
17151850131729367131729502
18513276131729876131731301

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4548603Full LengthBC012325solute carrier family 22 (organic cation/carnitine transporter), member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003051  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003060 NP_003051 O76082 MFS_1

Related Sequences

 
mRNAGenPeptSwissProt
AF057164 AAC24828 O76082
BC012325 AAH12325 O76082
DQ893671 ABM84597  
DQ895818 ABM86744  
AB015050 BAA29023 O76082
AK128610 BAC87527 O76082
AB209484 BAD92721 Q59FH6
AB291606 BAF45812 O76082
AK313230 BAG36041 O76082

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC22A5 NP_003051 M.musculus Slc22a5 20520 Gene Info NP_035526 85
R.norvegicus Slc22a5 29726   NP_062142 85
A.thaliana 2-Oct 844274   NP_178054 34
A.thaliana 3-Oct 838209   NP_173089 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)