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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMD11, Proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Sequence ID:NM_001270482
NM_002815
Entrez Gene ID:5717
Ensembl ID:ENSG00000108671

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 30771530 - 30808041


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820583Full LengthBC000437proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
2820583Full LengthBC004430proteasome (prosome, macropain) 26S subunit, non-ATPase, 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002806  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270482 NP_001257411    
NM_002815 NP_002806 O00231 PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF001212 AAB58732 O00231
BC000437 AAH00437 O00231
BC004430 AAH04430 O00231
AB003102 BAA19748 O00231
AK223196 BAD96916 O00231
AK290602 BAF83291 O00231
AK300342 BAG62087 B4DTS5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMD11 NP_002806 M.musculus Psmd11 69077 Gene Info NP_848731 100
R.norvegicus Psmd11 303353   NP_001100497 100
A.gambiae AgaP_AGAP001440 1281739   XP_321691 68
D.melanogaster Rpn6 36638   NP_725412 68
S.pombe rpn6 2541807   NP_593111 57
C.elegans rpn-6 175972   NP_001022621 54
A.thaliana ATS9 839789   NP_174210 53
N.crassa NCU01596 3872655   XP_956507 52
S.cerevisiae RPN6 851461   NP_010186 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)