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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GLB1, Galactosidase, beta 1
Sequence ID:NM_001039770
NM_001136238
NM_000404
NM_001079811
NM_001135602
RefSeqGene ID:NG_009005
Entrez Gene ID:2720
Ensembl ID:ENSG00000170266

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
GM1-GANGLIOSIDOSIS, TYPE I 
GM1-GANGLIOSIDOSIS, TYPE II 
GM1-GANGLIOSIDOSIS, TYPE III 
MUCOPOLYSACCHARIDOSIS TYPE IVB (MORQUIO) 

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 33038225 - 33040556

 Exon Info From UCSC:
NM_001039770
NM_001136238
NM_000404
NM_001079811
NM_001135602

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2988086Full LengthBC007493galactosidase, beta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000395  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000404 NP_000395 P16278 EC 3.2.1.23 Glyco_hydro_35
NM_001039770 NP_001034859 Q6ZT21    
NM_001079811 NP_001073279      
NM_001135602 NP_001129074      
NM_001136238 NP_001129710      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M27508 AAA35599 P16278 EC 3.2.1.23
M27507 AAA51819 P16278 EC 3.2.1.23
M22590 AAA51822 P16278 EC 3.2.1.23
M34423 AAA51823 P16278 EC 3.2.1.23
BC007493 AAH07493 P16278 EC 3.2.1.23
BC136872 AAI36873 Q6ZT21  
BC136873 AAI36874 Q6ZT21  
BT007147 AAP35811 P16278 EC 3.2.1.23
DQ890689 ABM81615    
DQ893871 ABM84797    
AK126979 BAC86774 Q6ZT21  
AK128242 BAC87349 Q6ZT21  
AK222763 BAD96483 Q53H18  
AK223091 BAD96811 Q53G40  
AK312988 BAG35825 P16278 EC 3.2.1.23
AK298985 BAH12915 B7Z5H9  
AK300021 BAH13196 P16278 EC 3.2.1.23
AK300753 BAH13341 B7Z6Q5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GLB1 NP_000395 M.musculus Glb1 12091 Gene Info NP_033882 78
R.norvegicus Glb1 316033   NP_001101662 77
A.thaliana BGAL17 843630   NP_565051 45
D.melanogaster Gal 33839   NP_608978 44
A.gambiae AgaP_AGAP002055 1281056   XP_550752 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)