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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ZSCAN20, Zinc finger and SCAN domain containing 20
Sequence ID:NM_145238
Entrez Gene ID:7579
Ensembl ID:ENSG00000121903

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 33938245 - 33961253

NM_145238 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1573393823133938287
585843394477933945305
5857713395406433954250
7728483395471433954790
8499333395511733955201
93416113395662433957301
161220403395878633959214
204142163395981733961992

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4110431Full LengthBC008827zinc finger and SCAN domain containing 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_660281  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145238 NP_660281 P17040 zf-C2H2
SCAN

Related Sequences

 
mRNAGenPeptSwissProt
BC008827 AAH08827 P17040
BC011404 AAH11404 P17040
AK131405 BAD18552 P17040
AK290195 BAF82884 P17040
X52360 CAA36586 P17040

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ZSCAN20 NP_660281 M.musculus Zscan20 269585 Gene Info NP_808426 77
R.norvegicus Zscan20 500549   XP_575911 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)