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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC6A9, solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Sequence ID:NM_001024845
NM_001261380
NM_006934
NM_201649
NR_048548
NR_048549
Entrez Gene ID:6536
Ensembl ID:ENSG00000196517

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 44462992 - 44482815

 Exon Info From UCSC:
NM_001024845
NM_006934
NM_201649

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062833Full LengthBC156979solute carrier family 6 (neurotransmitter transporter, glycine), member 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_964012  NP_001020016  NP_008865  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001024845 NP_001020016   SNF
NM_001261380 NP_001248309    
NM_006934 NP_008865   SNF
NM_201649 NP_964012 P48067 SNF

Related Sequences

 
mRNAGenPeptSwissProt
S70609 AAB30784 P48067
S70612 AAB30785 P48067
BC156979 AAI56980  
AK296438 BAH12354 B7Z3W8
AK298611 BAH12825 B7Z589
AK304057 BAH14101 B7Z8W5
AK315933 BAH14304 B7Z9G8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC6A9 NP_964012 M.musculus Slc6a9 14664 Gene Info NP_032161 97
R.norvegicus Slc6a9 116509   NP_446270 96
A.gambiae AgaP_AGAP008467 1277513   XP_316980 44
D.melanogaster Ntl 34046   NP_609135 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)