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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TSPAN7, Tetraspanin 7
Sequence ID:NM_004615
RefSeqGene ID:NG_009160
Entrez Gene ID:7102
Ensembl ID:ENSG00000156298

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
MENTAL RETARDATION, X-LINKED 58 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.4Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 38420734 - 38548172

NM_004615 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11503842073038420879
1513393852537438525562
3404143853062938530703
4155103853347438533569
5116663853495838535113
6677503854045738540540
7518263854685238546927
82718053854719238548170

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4801388Full LengthBC018036tetraspanin 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004606  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004615 NP_004606 P41732 Tetraspannin

Related Sequences

 
mRNAGenPeptSwissProt
BC018036 AAH18036 P41732
DQ892093 ABM83019  
DQ895571 ABM86497  
D10653 BAA01501 P41732
Q7Z3Z6
D29808 BAA06191 P41732
Q7Z3Z6
AB062057 BAB55824 P41732
AB062057 BAB55825 P41732
Q7Z3Z6
AB102665 BAC81134 Q7Z3Z6
AK312343 BAG35264 P41732
AK293178 BAG56721 B4DDG0
AK293534 BAG57016 B4DEA5
AK293552 BAG57029 B4DEB8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TSPAN7 NP_004606 M.musculus Tspan7 21912 Gene Info NP_062608 98
R.norvegicus Tspan7 363447   NP_001102285 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)