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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. DDX1, DEAD (Asp-Glu-Ala-Asp) box helicase 1
Sequence ID:NM_004939
Entrez Gene ID:1653
Ensembl ID:ENSG00000079785

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 15770034 - 15771842

 Exon Info From UCSC:
NM_004939

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4549185Full LengthBC012132DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
6174205Full LengthBC053673DEAD (Asp-Glu-Ala-Asp) box polypeptide 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004930  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_004939 NP_004930 Q92499 EC 3.6.4.13 DEAD
Helicase_C
SPRY

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC012132 AAH12132 Q92499 EC 3.6.4.13
BC053673 AAH53673 Q92499 EC 3.6.4.13
EF418570 ABN70940 A3RJH1  
EF418571 ABN70941 A3RJH1  
AK313933 BAG36652 A3RJH1  
AK297432 BAG59860 B4DME8  
AK298212 BAG60482 B4DP70  
AK298426 BAG60648 B4DPN6  
AB593031 BAJ83985 A3RJH1  
AB593032 BAJ83986 A3RJH1  
AB593033 BAJ83987 F1T0B3  
AB593034 BAJ83988 A3RJH1  
X70649 CAA49992 Q92499 EC 3.6.4.13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX1 NP_004930 M.musculus Ddx1 104721 Gene Info NP_598801 98
R.norvegicus Ddx1 84474   NP_445866 98
A.gambiae AgaP_AGAP004765 1278460   XP_318051 63
D.melanogaster Ddx1 40457   NP_524212 61
C.elegans Y55F3BR.1 176913   NP_500004 50
P.falciparum PFE1085w 813032   XP_001351774 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)