Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPG20, Spastic paraplegia 20 (Troyer syndrome)
Sequence ID:NM_015087
NM_001142296
NM_001142295
NM_001142294
RefSeqGene ID:NG_011559
Entrez Gene ID:23111
Ensembl ID:ENSG00000133104

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 36877161 - 36920420

 Exon Info From UCSC:
NM_015087
NM_001142296
NM_001142295
NM_001142294

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5313378Full LengthBC047083spastic paraplegia 20 (Troyer syndrome)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142294 NP_001135766    
NM_001142295 NP_001135767    
NM_001142296 NP_001135768    
NM_015087 NP_055902 Q8N0X7  

Related Sequences

 
mRNAGenPeptSwissProt
BC047083 AAH47083 Q8N0X7
AY038359 AAK72374 Q8N0X7
AY123329 AAM76671 Q8N0X7
AB011182 BAA25536 Q8N0X7
AK291724 BAF84413 A8K6Q9
AK001949 BAG50995 B3KMI3
AK002207 BAG51030 B3KML8
AK302119 BAG63497 B4DXT5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPG20 NP_001135766 M.musculus Spg20 229285 Gene Info NP_001138460 88
R.norvegicus Spg20 295053   NP_001099903 86
C.elegans F57B10.9 172369   NP_491888 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)