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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM27, tripartite motif containing 27
Sequence ID:NM_006510
NM_030950
Entrez Gene ID:5987
Ensembl ID:ENSG00000204713

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 28871840 - 28891643

Transcript StartTranscript EndChromosomal Start Chromosomal End
216642887077928872441
166516912887501228875038
169217242887658428876616
172518402887674928876864
184118632887947228879494
186420942888778828888018
209521902888966828889763
219129692889098928891767

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3906095Full LengthBC013580tripartite motif-containing 27
4827419Full LengthBC066924tripartite motif-containing 27

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006501  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006510 NP_006501 P14373 zf-C3HC4
SPRY
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
J03407 AAA36564 P14373
AF230393 AAG50172 P14373
AF230394 AAG50173 P14373
BC013580 AAH13580 P14373
BC066924 AAH66924 P14373
DQ890982 ABM81908  
DQ894156 ABM85082  
AB209885 BAD93122 Q59EC6
AX776009 CAE11704 P14373
AX776011 CAE11705  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM27 NP_006501 M.musculus Trim27 19720 Gene Info NP_033080 99
R.norvegicus Trim27 291171   NP_001128446 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)