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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LAMTOR5, late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
Sequence ID:NM_006402
Entrez Gene ID:10542
Ensembl ID:ENSG00000134248

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 110943876 - 110950297

NM_006402 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
10336110943878110944204
337454110946540110946657
455516110948939110949000
517855110950207110950545

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5190406Full LengthBC062619hepatitis B virus x interacting protein

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006402 NP_006393    

Related Sequences

 
mRNAGenPeptSwissProt
AF029890 AAC52032 O43504
BC062619 AAH62619 O43504
AY623819 AAV30683 O43504
HQ257924 ADR82678  
AK056679 BAG51783 B3KPS1
CR456866 CAG33147 O43504
CR542130 CAG46927 O43504

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HBXIP NP_006393 M.musculus Hbxip 68576 Gene Info NP_081050 80
R.norvegicus Hbxip 295357   NP_001099932 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta