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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCDH12, protocadherin 12
Sequence ID:NM_016580
Entrez Gene ID:51294
Ensembl ID:ENSG00000113555

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 141324529 - 141337473

NM_016580 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
30869141324530141325369
8701021141328996141329147
10221119141331057141331154
11205210141334536141338626

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5174442Full LengthBC052973protocadherin 12
5177606Full LengthBC042634protocadherin 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057664  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016580 NP_057664 Q9NPG4 Cadherin
Cadherin_2

Related Sequences

 
mRNAGenPeptSwissProt
AF231025 AAF61931 Q9NPG4
AF240635 AAF73962 Q9NPG4
BC042634 AAH42634 Q8IUP8
BC052973 AAH52973 Q7Z738
AY358428 AAQ88794 Q9NPG4
AB026893 BAA95162 Q9NPG4
AK023785 BAB14677 Q9NPG4
AK024140 BAB14837 Q9NPG4
AK027282 BAB55016 Q9NPG4
AK315029 BAG37515 B2RCB8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCDH12 NP_057664 M.musculus Pcdh12 53601 Gene Info NP_059074 82
R.norvegicus Pcdh12 116808   NP_446396 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)