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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLDN1, Claudin 1
Sequence ID:NM_021101
RefSeqGene ID:NG_021418
Entrez Gene ID:9076
Ensembl ID:ENSG00000163347

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ICHTHYOSIS, LEUKOCYTE VACUOLES, ALOPECIA, AND SCLEROSING CHOLANGITIS 

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q28-q29Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 190023492 - 190024150

NM_021101 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
22739190023490190026227
27402824190027957190028041
28252989190030660190030824
29903452190039772190040234

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4500534Full LengthBC012471claudin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066924  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021101 NP_066924 O95832 PMP22_Claudin

Related Sequences

 
mRNAGenPeptSwissProt
AF101051 AAD16433 O95832
AF115546 AAD22962 O95832
AF134160 AAF61393 O95832
BC012471 AAH12471 O95832
AF114837 AAP97236 Q7Z4X9
AY358652 AAQ89015 O95832
DQ891457 ABM82383  
DQ896823 ABM87822  
EF564137 ABQ42705 A5JSJ9
AK312866 BAG35718 A5JSJ9
AK296934 BAG59485 B4DLC3
CR457138 CAG33419 O95832

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLDN1 NP_066924 M.musculus Cldn1 12737 Gene Info NP_057883 91
R.norvegicus Cldn1 65129   NP_113887 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)