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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BCAT1, branched chain amino-acid transaminase 1, cytosolic
Sequence ID:NM_001178091
NM_001178092
NM_001178093
NM_001178094
NM_005504
RefSeqGene ID:NG_008170
Entrez Gene ID:586
Ensembl ID:ENSG00000060982

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 24964295 - 24964859

 Exon Info From UCSC:
NM_001178091
NM_001178092
NM_001178093
NM_001178094
NM_005504

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4699263IncompleteBC026006branched chain aminotransferase 1, cytosolic

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005495  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001178091 NP_001171562      
NM_001178092 NP_001171563      
NM_001178093 NP_001171564      
NM_001178094 NP_001171565      
NM_005504 NP_005495 P54687 EC 2.6.1.42 Aminotran_4

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U21551 AAB08528 P54687 EC 2.6.1.42
AK056255 BAB71129 P54687 EC 2.6.1.42
AK128527 BAG54689 P54687 EC 2.6.1.42
AK294879 BAH11911 B7Z2M5  
AK299088 BAH12946 P54687 EC 2.6.1.42
CR749308 CAH18163 P54687 EC 2.6.1.42

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BCAT1 NP_001171564 M.musculus Bcat1 12035 Gene Info NP_001019639 84
R.norvegicus Bcat1 29592   NP_058949 76
D.melanogaster CG1673 32297   NP_572884 53
A.gambiae AgaP_AGAP000011 1272265   XP_311149 53
S.cerevisiae BAT2 853613   NP_012682 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)