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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SGCB, sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
Sequence ID:NM_000232
RefSeqGene ID:NG_008891
Entrez Gene ID:6443
Ensembl ID:ENSG00000163069

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2E 

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 52886871 - 52889313

NM_000232 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1734825288686052890325
348336145289413352894264
361538065289489552895086
380739925289584352896028
399342025289959652899805
420342955290439252904484

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4770458Full LengthBC020709sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
4795167IncompleteBC048972sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000223  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000232 NP_000223 Q16585
Q5U0N0
Sarcoglycan_1

Related Sequences

 
mRNAGenPeptSwissProt
U31116 AAA87034 Q16585
Q5U0N0
U29586 AAB41291 Q16585
Q5U0N0
BC020709 AAH20709 Q16585
Q5U0N0
BT019433 AAV38240 Q16585
Q5U0N0
DQ893140 ABM84066  
DQ896425 ABM87424  
EU176433 ABW03884  
AK289892 BAF82581 Q5U0N0
AK299765 BAH13121 B7Z635
CR456810 CAG33091 Q6IBJ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SGCB NP_000223 M.musculus Sgcb 24051 Gene Info NP_036020 95
R.norvegicus Sgcb 680229   XP_001056227 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)