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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NR1H3, nuclear receptor subfamily 1, group H, member 3
Sequence ID:NM_001130101
NM_001130102
NM_001251934
NM_001251935
NM_005693
RefSeqGene ID:NG_030392
Entrez Gene ID:10062
Ensembl ID:ENSG00000025434

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 47280767 - 47290247

 Exon Info From UCSC:
NM_001130101
NM_001130102
NM_005693

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3957848Full LengthBC008819nuclear receptor subfamily 1, group H, member 3
5744574Full LengthBC041172nuclear receptor subfamily 1, group H, member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005684  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130101 NP_001123573    
NM_001130102 NP_001123574    
NM_001251934 NP_001238863    
NM_001251935 NP_001238864    
NM_005693 NP_005684 Q13133 Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
U22662 AAA85856 Q13133
BC008819 AAH08819 Q13133
BC041172 AAH41172 Q8IW13
BT019411 AAV38218 Q5U0N9
EU832060 ACE86722  
EU831967 ACE87408  
HQ692819 ADZ17330 F1D8N1
AK290614 BAF83303 Q13133
AK313311 BAG36116 B2R8B9
AK122661 BAG53649 B3KV37
AK302132 BAG63507 B4DXU5
AB307698 BAH02289 B6ZGS8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NR1H3 NP_005684 R.norvegicus Nr1h3 58852   NP_113815 92
M.musculus Nr1h3 22259 Gene Info NP_001171201 92
A.gambiae AgaP_AGAP012211 1280477   XP_320323 46
D.melanogaster EcR 35540   NP_724456 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta