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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TAF7, TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
Sequence ID:NM_005642
RefSeqGene ID:NG_000012
Entrez Gene ID:6879
Ensembl ID:ENSG00000178913

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140698561 - 140700334

NM_005642 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
172310140698057140700350

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5539359Full LengthBC032737TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
4909007IncompleteBC022798TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005633  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005642 NP_005633 Q15545 TAFII55_N

Related Sequences

 
mRNAGenPeptSwissProt
U18062 AAB60347 Q15545
BC022798 AAH22798 Q8TBD8
BC032737 AAH32737 Q15545
DQ890889 ABM81815  
DQ894044 ABM84970  
AK314837 BAG37356 Q15545
X97999 CAA66636 Q15545

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TAF7 NP_005633 R.norvegicus Taf7 307485   NP_001100864 96
M.musculus Taf7 24074 Gene Info NP_786964 95
D.melanogaster Taf7 40934   NP_649748 50
A.gambiae AgaP_AGAP010493 1275232   XP_314467 47
C.elegans taf-7.2 176686   NP_499647 41
C.elegans taf-7.1 192053   NP_509976 37
S.pombe ptr6 2542822   NP_593650 35
N.crassa NCU03095 3880014   XP_963865 33
S.cerevisiae TAF7 855267   NP_013954 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)