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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HDAC5, Histone deacetylase 5
Sequence ID:NM_001015053
NM_005474
Entrez Gene ID:10014
Ensembl ID:ENSG00000108840

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 42154121 - 42200986

 Exon Info From UCSC:
NM_001015053
NM_005474

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6043491Full LengthBC051824histone deacetylase 5
3867625IncompleteBC013140histone deacetylase 5
4933587IncompleteBC038423histone deacetylase 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001015053  NP_005465  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001015053 NP_001015053     Hist_deacetyl
NM_005474 NP_005465 Q9UQL6 EC 3.5.1.98 Hist_deacetyl

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF039691 AAC18040 Q9UQL6 EC 3.5.1.98
AF132608 AAD29047 Q9UQL6 EC 3.5.1.98
BC013140 AAH13140 Q9UQL6 EC 3.5.1.98
BC051824 AAH51824 Q9UQL6 EC 3.5.1.98
AB011172 BAA25526 Q9UQL6 EC 3.5.1.98
AK027734 BAB55329 Q96K29  
AB177853 BAD66831 Q5W9G6  
AK294760 BAG57895 B4DGT4  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HDAC5 NP_001015053 M.musculus Hdac5 15184 Gene Info NP_001071164 96
R.norvegicus Hdac5 84580   NP_445902 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta