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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ABLIM1, actin binding LIM protein 1
Sequence ID:NM_001003407
NM_001003408
NM_002313
NM_006720
RefSeqGene ID:NG_029872
Entrez Gene ID:3983
Ensembl ID:ENSG00000099204

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 116195798 - 116418057

 Exon Info From UCSC:
NM_001003407
NM_001003408
NM_002313
NM_006720

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3347450Full LengthBC002448actin binding LIM protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006711  NP_001003407  NP_002304  NP_001003408  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001003407 NP_001003407   LIM
VHP
NM_001003408 NP_001003408   LIM
VHP
NM_002313 NP_002304 O14639 LIM
VHP
NM_006720 NP_006711   VHP

Related Sequences

 
mRNAGenPeptSwissProt
AF005654 AAC51676 O14639
BC002448 AAH02448 O14639
D31883 BAA06681 O14639
AK093471 BAG52725 B3KSG3
AK098277 BAG53605 O14639
AK122891 BAG53784 B3KVH2
AK298709 BAG60865 B4DQA3
AK297344 BAH12557 B7Z4H1
CR749819 CAH18679 O14639

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABLIM1 NP_002304 R.norvegicus Ablim1 307989   NP_001037859 94
M.musculus Ablim1 226251 Gene Info NP_848803 92
D.melanogaster CG31352 261629   NP_001163574 45
D.melanogaster p24-2 318890   NP_001189204 44
D.melanogaster unc-115 41178   NP_731391 44
A.gambiae AgaP_AGAP005425 1276123   XP_315432 43
C.elegans unc-115 181227   NP_001024542 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)