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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PTRF, Polymerase I and transcript release factor
Sequence ID:NM_012232
RefSeqGene ID:NG_015845
Entrez Gene ID:284119
Ensembl ID:ENSG00000177469

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 40556630 - 40557319

NM_012232 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2029574055446840557405
295836514057464440575337

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4140111Full LengthBC008849polymerase I and transcript release factor
5269172Full LengthBC066123polymerase I and transcript release factor
6572478Full LengthBC073759polymerase I and transcript release factor
3622356IncompleteBC004295polymerase I and transcript release factor

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012232 NP_036364 Q6NZI2  

Related Sequences

 
mRNAGenPeptSwissProt
AF000421 AAC63404 Q6NZI2
AF312393 AAG27093 Q6NZI2
BC004295 AAH04295 Q6NZI2
BC008849 AAH08849 Q6NZI2
BC066123 AAH66123 Q6NZI2
BC073759 AAH73759 Q6NZI2
AK314389 BAG37014 Q6NZI2
AK092406 BAG52547 B3KRY5
AK298072 BAG60361 B4DNU9
AK298563 BAG60757 B4DPZ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTRF NP_036364 R.norvegicus Ptrf 287710   NP_001099311 94
M.musculus Ptrf 19285 Gene Info NP_033012 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)