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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TCF15, transcription factor 15 (basic helix-loop-helix)
Sequence ID:NM_004609
Entrez Gene ID:6939
Ensembl ID:ENSG00000125878

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 584902 - 590910

NM_004609 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3673584638585308
6741227590356590909

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063975Full LengthBC160039transcription factor 15 (basic helix-loop-helix)
30347726IncompleteBC067836transcription factor 15 (basic helix-loop-helix)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004600  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004609 NP_004600 Q12870 HLH

Related Sequences

 
mRNAGenPeptSwissProt
U08336 AAA19969 Q12870
BC067836 AAH67836 Q6NVX3
BC160039 AAI60039  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TCF15 NP_004600 M.musculus Tcf15 21407 Gene Info NP_033354 95
R.norvegicus Tcf15 296272   NP_001162051 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)