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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC15A1, solute carrier family 15 (oligopeptide transporter), member 1
Sequence ID:NM_005073
RefSeqGene ID:NG_017032
Entrez Gene ID:6564
Ensembl ID:ENSG00000088386

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q32.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 99353942 - 99378821

 Exon Info From UCSC:
NM_005073

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40008278Full LengthBC096327solute carrier family 15 (oligopeptide transporter), member 1
40008279Full LengthBC096328solute carrier family 15 (oligopeptide transporter), member 1
40008280Full LengthBC096329solute carrier family 15 (oligopeptide transporter), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005064  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005073 NP_005064 P46059 PTR2

Related Sequences

 
mRNAGenPeptSwissProt
U21936 AAA63797 P46059
U13173 AAB61693 P46059
AF043233 AAC15477 O43641
BC096327 AAH96327 Q4VAL9
BC096328 AAH96328 P46059
BC096329 AAH96329 P46059
AY634368 AAT48121 Q6GV26
EU544224 ACB71122 B2CQT6
AB001328 BAA22632 O14496

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC15A1 NP_005064 M.musculus Slc15a1 56643 Gene Info NP_444309 85
R.norvegicus Slc15a1 117261   NP_476462 84
C.elegans opt-1 177973   NP_502002 44
C.elegans opt-2 180919   NP_509087 44
A.gambiae AgaP_AGAP010383 1272661   XP_311562 43
D.melanogaster CG2930 31341   NP_788856 43
A.thaliana PTR2 814735   NP_178313 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)