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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VBP1, von Hippel-Lindau binding protein 1
Sequence ID:NM_003372
RefSeqGene ID:NG_013269
Entrez Gene ID:7411
Ensembl ID:ENSG00000155959

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 154425283 - 154467324

NM_003372 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1152154444700154444851
153277154448459154448583
278344154455515154455581
345443154456665154456763
444582154464509154464647
5831626154467052154468095

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6058145Full LengthBC046094von Hippel-Lindau binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003363  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003372 NP_003363 P61758 Prefoldin

Related Sequences

 
mRNAGenPeptSwissProt
U96759 AAC23907 Q6FH24
P61758
U56833 AAC50617 P61758
BC046094 AAH46094 P61758
BT019604 AAV38411 P61758
AK313420 BAG36212 P61758
AK301646 BAG63125 B4DWR3
Y17394 CAA76761 P61758
CR541932 CAG46730 Q6FH24

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VBP1 NP_003363 M.musculus Vbp1 22327 Gene Info NP_035822 97
D.melanogaster CG6719 41365   NP_650067 57
A.gambiae AgaP_AGAP011165 1270764   XP_309484 55
N.crassa NCU02264 3876094   XP_959908 47
S.pombe SPAC3H8.07c 2543378   NP_593000 46
S.cerevisiae PAC10 852969   NP_011592 45
A.thaliana PFD3 835011   NP_001032045 44
C.elegans pfd-3 173141   NP_493228 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)