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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SET, SET nuclear oncogene
Sequence ID:NM_001122821
NM_001248000
NM_001248001
NM_003011
RefSeqGene ID:NG_030356
Entrez Gene ID:6418
Ensembl ID:ENSG00000119335

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 131451535 - 131457033

 Exon Info From UCSC:
NM_001122821
NM_003011

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5587291Full LengthBC032749SET nuclear oncogene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003002  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001122821 NP_001116293 Q01105  
NM_001248000 NP_001234929    
NM_001248001 NP_001234930    
NM_003011 NP_003002   NAP

Related Sequences

 
mRNAGenPeptSwissProt
M93651 AAA60318 Q01105
U51924 AAC50460 Q01105
BC032749 AAH32749 Q01105
AY349172 AAQ79833 Q01105
DQ894408 ABM85334  
EF534308 ABP96841 Q01105
EU176263 ABW03714  
JF729356 AEO27880 Q5VXV3
D45198 BAA08139 Q01105
Q5VXV3
AK223556 BAD97276 Q01105
AK315313 BAG37717 B2RCX0
AK300609 BAG62304 A6NGV1
AK300794 BAG62453 Q5VXV3
X75091 CAA52982 Q01105
CR536543 CAG38780 Q01105
CR542050 CAG46847 Q01105
AM392720 CAL37598  
AM392742 CAL37620  
AM393022 CAL37900  
AM393175 CAL38053  
AM393446 CAL38324  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SET NP_001116293 R.norvegicus Set 307947   NP_001012522 94
M.musculus Set 56086 Gene Info NP_076360 94
M.musculus Gm9531 671392 Gene Info XP_001472086 94
D.melanogaster Set 41844   NP_650438 61
A.gambiae AgaP_AGAP003598 1274262   XP_313356 58
C.elegans spr-2 177704   NP_001021333 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta