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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SCN1B, sodium channel, voltage-gated, type I, beta subunit
Sequence ID:NM_001037
NM_199037
RefSeqGene ID:NG_013359
Entrez Gene ID:6324
Ensembl ID:ENSG00000105711

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BRUGADA SYNDROME 5 
EPILEPSY, GENERALIZED, WITH FEBRILE SEIZURES PLUS, TYPE 1GABRD
GABRG2
SCN1A

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 35521636 - 35530977

 Exon Info From UCSC:
NM_001037
NM_199037

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5728955Full LengthBC067122sodium channel, voltage-gated, type I, beta
7503573Full LengthBC112922sodium channel, voltage-gated, type I, beta
4585335IncompleteBC021266sodium channel, voltage-gated, type I, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001028  NP_950238  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001037 NP_001028 Q07699 ig
NM_199037 NP_950238   ig

Related Sequences

 
mRNAGenPeptSwissProt
L10338 AAA60391 Q07699
L16242 AAA61277 Q07699
BC021266 AAH21266 Q8WU42
BC067122 AAH67122 Q07699
BC112922 AAI12923 Q2KHR9
AY391842 AAR25552 Q07699
BT019923 AAV38726 Q07699
AK313279 BAG36087 Q07699
AK295477 BAG58404 B4DI92

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCN1B NP_001028 M.musculus Scn1b 20266 Gene Info NP_035452 96
R.norvegicus Scn1b 29686   NP_058984 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)