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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. POLR2F, polymerase (RNA) II (DNA directed) polypeptide F
Sequence ID:NM_021974
Entrez Gene ID:5435
Ensembl ID:ENSG00000100142

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 38436310 - 38437922

NM_021974 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11413834967338349813
1422113835277938352848
2123423835535238355482
3434143836310538363176
41521013836363138365317

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3546712Full LengthBC003582polymerase (RNA) II (DNA directed) polypeptide F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068809  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021974 NP_068809 P61218 RNA_pol_Rpb6

Related Sequences

 
mRNAGenPeptSwissProt
BC003582 AAH03582 P61218
AK098727 BAC05392 Q8N7A7
AK311831 BAG34773 B2R4H6
CR456546 CAG30432 P61218
CR457021 CAG33302 P61218
CU013146 CAK54577  
CU013434 CAK54876  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens POLR2F NP_068809 M.musculus Polr2f 69833 Gene Info NP_081507 99
R.norvegicus Polr2f 83503   NP_112625 99
A.gambiae AgaP_AGAP005873 1276540   XP_315900 74
D.melanogaster RpII18 48312   NP_524910 71
A.thaliana NRPB6A 835269   NP_200007 68
C.elegans rpb-6 174630   NP_496278 62
S.pombe rpb6 2539083   NP_587956 60
A.thaliana NRPB6B 815006   NP_178540 59
N.crassa NCU11012 5847863   XP_001728485 58
S.cerevisiae RPO26 856317   NP_015513 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)