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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX12, SRY (sex determining region Y)-box 12
Sequence ID:NM_006943
Entrez Gene ID:6666
Ensembl ID:ENSG00000177732

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 306268 - 309373

NM_006943 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14627306238310864

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6480102Full LengthBC067361SRY (sex determining region Y)-box 12
5243032IncompleteBC028103SRY (sex determining region Y)-box 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008874  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006943 NP_008874 O15370 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
U35612 AAB69627 O15370
BC067361 AAH67361 O15370

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX12 NP_008874 M.musculus Sox12 20667 Gene Info NP_035568 95
R.norvegicus Sox12 689988   NP_001162121 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)