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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CAST, calpastatin
Sequence ID:NM_001042440
NM_001190442
NM_173060
NR_033798
NM_001042441
NM_001042442
NM_001042443
NM_001042444
NM_001042445
NM_001042446
NM_001750
NM_173061
NM_173062
NM_173063
RefSeqGene ID:NG_029490
Entrez Gene ID:831
Ensembl ID:ENSG00000153113

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 96038505 - 96065334

 Exon Info From UCSC:
NM_001042440
NM_001190442
NM_173060

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3878564Full LengthBC013579calpastatin
4861420IncompleteBC016066calpastatin
6070772IncompleteBC078149calpastatin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775083  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042440 NP_001035905    
NM_001190442 NP_001177371    
NM_173060 NP_775083   Calpain_inhib

Related Sequences

 
mRNAGenPeptSwissProt
M33328 AAA52296 P20810
U38525 AAA80684 P20810
S73329 AAB32311 P20810
M86258 AAB59398 P20810
U31345 AAB60371 P20810
U31346 AAB60372 P20810
U58996 AAC14353 Q15786
U26724 AAC50136 P20810
AF095891 AAD09102 P20810
AF327443 AAG48151 P20810
BC013579 AAH13579 P20810
BC016066 AAH16066 P20810
BC078149 AAH78149 Q6AZE3
AY189741 AAO34397 Q86YM9
BT009783 AAP88785 P20810
DQ891479 ABM82405  
DQ894668 ABM85594  
D16217 BAA03747 P20810
D50827 BAA09438 P20810
AB026049 BAA76923 Q9Y2M4
AB208816 BAD92053 Q59HE3
AK292289 BAF84978 A8K8C4
AK292356 BAF85045 A8K8C4
AK315146 BAG37594 B2RCJ7
AK315673 BAG38038 B2RDU1
AK296919 BAH12454 B7Z468
AK297879 BAH12685 B7Z4U9
AK298541 BAH12810 B7Z574
AK299384 BAH13022 B7Z5T6
AK299402 BAH13025 B7Z5T9
AK300624 BAH13316 B7Z6N0
AK302206 BAH13650 B7Z7L4
AK303836 BAH14064 B7Z8S8
AK303900 BAH14077 B7Z8U1
AM393425 CAL38303  
AM393434 CAL38312  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAST NP_001035905 M.musculus Cast 12380 Gene Info NP_033947 71
R.norvegicus Cast 25403   NP_445747 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)