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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PTPN13, Protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)
Sequence ID:NM_080685
NM_080683
NM_006264
NM_080684
RefSeqGene ID:NG_029704
Entrez Gene ID:5783
Ensembl ID:ENSG00000163629

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 87556505 - 87736310

 Exon Info From UCSC:
NM_080685
NM_080683
NM_006264
NM_080684

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021645Full LengthBC140777protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)
5495336IncompleteBC039610protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542414  NP_542416  NP_542415  NP_006255  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_006264 NP_006255     Y_phosphatase
Band_41
PDZ
NM_080683 NP_542414 Q12923 EC 3.1.3.48 Y_phosphatase
Band_41
PDZ
NM_080684 NP_542415     Y_phosphatase
Band_41
PDZ
NM_080685 NP_542416     Y_phosphatase
Band_41
PDZ

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U12128 AAB60339 Q12923 EC 3.1.3.48
L34583 AAC41755 Q12923 EC 3.1.3.48
AF233323 AAF63474 Q12923 EC 3.1.3.48
BC039610 AAH39610 Q12923 EC 3.1.3.48
BC140777 AAI40778 Q12923 EC 3.1.3.48
D21209 BAA04750 Q12923 EC 3.1.3.48
D21210 BAA04751 Q12923 EC 3.1.3.48
D21211 BAA04752 Q12923 EC 3.1.3.48
AB208904 BAD92141 Q59H55  
X79676 CAA56124 Q12923 EC 3.1.3.48
X80289 CAA56563 Q12923 EC 3.1.3.48
BX647553 CAH10380 Q6AWB9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTPN13 NP_542416 M.musculus Ptpn13 19249 Gene Info NP_035334 82
R.norvegicus Ptpn13 498331   XP_213997 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta