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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LST1, leukocyte specific transcript 1
Sequence ID:NM_001166538
NM_007161
NM_205837
NM_205838
NM_205839
NM_205840
NR_029461
NR_029462
RefSeqGene ID:NG_030378
Entrez Gene ID:7940
Ensembl ID:ENSG00000204482

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31554475 - 31556587

 Exon Info From UCSC:
NM_001166538
NM_007161
NM_205837
NM_205838
NM_205839
NM_205840

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40003000Full LengthBC103855leukocyte specific transcript 1
40003004Full LengthBC103856leukocyte specific transcript 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_995312  NP_995310  NP_009092  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166538 NP_001160010    
NM_007161 NP_009092   LST1
NM_205837 NP_995309    
NM_205838 NP_995310   LST1
NM_205839 NP_995311 O00453  
NM_205840 NP_995312   LST1

Related Sequences

 
mRNAGenPeptSwissProt
AF000424 AAB86998 O00453
AF000425 AAB86999 O00453
AF000426 AAB87000 O00453
BC103855 AAI03856 O00453
BC103856 AAI03857 O00453
AY852265 AAX45331 Q2HNT4
AY852266 AAX45332 Q2HNT3
DQ099382 AAZ13758 Q4F969
Y18490 CAB59903 O00453
Y18486 CAB59904 O00453
Y18487 CAB59905 O00453
Y18489 CAB59906 O00453
Y18488 CAB60038 O00453

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)