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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GBE1, glucan (1,4-alpha-), branching enzyme 1
Sequence ID:NM_000158
RefSeqGene ID:NG_011810
Entrez Gene ID:2632
Ensembl ID:ENSG00000114480

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 81539012 - 81810840

 Exon Info From UCSC:
NM_000158

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4574938Full LengthBC012098glucan (1,4-alpha-), branching enzyme 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000149  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000158 NP_000149   Alpha-amylase
Alpha-amylase_C
Isoamylase_N

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L07956 AAA58642 Q04446 EC 2.4.1.18
BC012098 AAH12098 Q04446 EC 2.4.1.18
EU176342 ABW03793    
AB209731 BAD92968 Q59ET0  
AK125918 BAG54265 Q04446 EC 2.4.1.18
AK297939 BAG60255 B4DNJ3  
AK300620 BAG62313 B4DUF1  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GBE1 NP_000149 M.musculus Gbe1 74185 Gene Info NP_083079 91
R.norvegicus Gbe1 288333   NP_001093972 91
N.crassa NCU05429 3879400   XP_963252 63
D.melanogaster CG33138 326264   NP_788342 62
S.cerevisiae GLC3 856705   NP_010905 62
A.gambiae AgaP_AGAP010428 1272619   XP_311519 62
A.thaliana SBE2.1 818212   NP_181180 59
A.thaliana SBE2.2 831769   NP_195985 58
C.elegans T04A8.7 3565201   NP_497961 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)