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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRDM1, PR domain containing 1, with ZNF domain
Sequence ID:NM_001198
NM_182907
RefSeqGene ID:NG_029115
Entrez Gene ID:639
Ensembl ID:ENSG00000057657

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 106534194 - 106555383

 Exon Info From UCSC:
NM_001198
NM_182907

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40001920Full LengthBC103832PR domain containing 1, with ZNF domain
40001921Full LengthBC103833PR domain containing 1, with ZNF domain
40001922Full LengthBC103834PR domain containing 1, with ZNF domain
40001923Full LengthBC103835PR domain containing 1, with ZNF domain

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_878911  NP_001189  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001198 NP_001189 Q5T4E8
O75626
zf-C2H2
SET
NM_182907 NP_878911   zf-C2H2
SET

Related Sequences

 
mRNAGenPeptSwissProt
AF084199 AAC33300 Q5T4E8
O75626
BC103832 AAI03833 O75626
BC103833 AAI03834 O75626
BC103834 AAI03835 O75626
BC103835 AAI03836 Q3SYG0
AY198414 AAO45623 Q5T4E8
O75626
AY198415 AAO45624 O75626
EF151143 ABL96617 A1YZ20
EU832048 ACE86710  
EU831954 ACE87395  
AK289556 BAF82245 A8K0J1
AK301341 BAG62889 B4DW27
AL832963 CAH56276 Q658W0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRDM1 NP_001189 M.musculus Prdm1 12142 Gene Info NP_031574 89
R.norvegicus Prdm1 309871   NP_001101109 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)