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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CDK5RAP1, CDK5 regulatory subunit associated protein 1
Sequence ID:NM_016082
NM_016408
Entrez Gene ID:51654
Ensembl ID:ENSG00000101391

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20pter-q11.23

Chromosomal Position (from UCSC)

Chromosomal Position:20: 31946644 - 31989325

 Exon Info From UCSC:
NM_016082
NM_016408

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3535564Full LengthBC001215CDK5 regulatory subunit associated protein 1
4418659Full LengthBC050706CDK5 regulatory subunit associated protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057166  NP_057492  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016082 NP_057166   UPF0004
TRAM
Radical_SAM
NM_016408 NP_057492   UPF0004
TRAM
Radical_SAM

Related Sequences

 
mRNAGenPeptSwissProt
AF152097 AAD34147 Q96SZ6
AF161516 AAF29131 Q96SZ6
BC001215 AAH01215 Q96SZ6
BC050706 AAH50706 Q96SZ6
AY462283 AAS18317 Q675N5
AY462284 AAS18318 Q675N4
JF432520 ADZ15737  
AK023992 BAB14760 Q96SZ6
AK027449 BAB55120 Q96SZ6
AK222745 BAD96465 Q53H36
AK292075 BAF84764 Q96SZ6
AK295342 BAG58313 B4DI01

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDK5RAP1 NP_057492 M.musculus Cdk5rap1 66971 Gene Info NP_080152 88
R.norvegicus Cdk5rap1 252827   NP_663773 87
A.gambiae AgaP_AGAP012104 1280572   XP_320425 59
D.melanogaster CG6345 41271   NP_650002 56
A.thaliana AT4G36390 829791   NP_195357 52
C.elegans F25B5.5 175841   NP_498290 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)