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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. DCAF6, DDB1 and CUL4 associated factor 6
Sequence ID:NM_001017977
NM_001198956
NM_001198957
NM_018442
Entrez Gene ID:55827
Ensembl ID:ENSG00000143164

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q24.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 167906055 - 168045072

 Exon Info From UCSC:
NM_001017977
NM_018442

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4763336IncompleteBC025262IQ motif and WD repeats 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060912  NP_001017977  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017977 NP_001017977 Q58WW2 WD40
NM_001198956 NP_001185885    
NM_001198957 NP_001185886    
NM_018442 NP_060912   WD40

Related Sequences

 
mRNAGenPeptSwissProt
AF150734 AAF67474 Q9P0U0
BC025262 AAH25262 Q58WW2
AF116725 AAO15301 Q58WW2
AY766164 AAX09330 Q58WW2
DQ768089 ABG76793 Q58WW2
DQ892143 ABM83069  
DQ895337 ABM86263  
AK297847 BAG60180 Q58WW2
AL136738 CAB66672 Q58WW2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DCAF6 NP_001185885 R.norvegicus Dcaf6 289181   XP_213926 89
M.musculus Dcaf6 74106 Gene Info NP_083035 80
A.gambiae AgaP_AGAP000981 1270478   XP_309177 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)