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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC5A6, solute carrier family 5 (sodium-dependent vitamin transporter), member 6
Sequence ID:NM_021095
NR_028323
Entrez Gene ID:8884
Ensembl ID:ENSG00000138074

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 27422457 - 27435071

 Exon Info From UCSC:
NM_021095

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3507776Full LengthBC012806solute carrier family 5 (sodium-dependent vitamin transporter), member 6
3628126Full LengthBC015631solute carrier family 5 (sodium-dependent vitamin transporter), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066918  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021095 NP_066918 Q9Y289 SSF

Related Sequences

 
mRNAGenPeptSwissProt
AF069307 AAD31727 Q9Y289
AF081571 AAD37481 Q9Y289
AF288781 AAG00587 Q9HD19
BC012806 AAH12806 Q9Y289
BC015631 AAH15631 Q9Y289
AF442149 AAL84706 Q9HD19
AF442150 AAL84707 Q9HD19
EU176791 ABW03592  
AK075078 BAC11387 Q8NC18
AK314545 BAG37132 Q9Y289
AK027855 BAG51384 B3KNM2
AK293162 BAG56706 B4DDE5
AL096737 CAH56408 Q659F8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC5A6 NP_066918 R.norvegicus Slc5a6 170551   NP_570102 84
M.musculus Slc5a6 330064 Gene Info NP_808538 83
A.gambiae AgaP_AGAP004199 1274035   XP_313095 43
D.melanogaster CG10444 37294   NP_611465 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)