Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BEST2, bestrophin 2
Sequence ID:NM_017682
Entrez Gene ID:54831
Ensembl ID:ENSG00000039987

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 12863406 - 12869269

NM_017682 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11521286340612863557
1532471286407312864167
2484811286536512865598
4826361286569012865844
6377141286619212866269
7158671286642812866580
8689481286666812866748
94911031286695412867108
110419081286846412869268

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9093423IncompleteBC169236vitelliform macular dystrophy 2-like 1
9093424IncompleteBC169237vitelliform macular dystrophy 2-like 1
9093425IncompleteBC169238vitelliform macular dystrophy 2-like 1
9093426IncompleteBC169239vitelliform macular dystrophy 2-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060152  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017682 NP_060152 Q8NFU1 Bestrophin

Related Sequences

 
mRNAGenPeptSwissProt
AF440756 AAM76995 Q8NFU1
AY515705 AAR99655 Q8NFU1
AK000139 BAA90970 Q8NFU1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BEST2 NP_060152 M.musculus Best2 212989 Gene Info NP_001123666 90
R.norvegicus Best2 364973   NP_001102365 90
A.gambiae AgaP_AGAP011745 1280897   XP_320767 53
D.melanogaster Best1 53431   NP_001138033 52
C.elegans ZK675.3 6418643   NP_001122668 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)