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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ACTL6A, Actin-like 6A
Sequence ID:NM_178042
NM_004301
NM_177989
Entrez Gene ID:86
Ensembl ID:ENSG00000136518

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q26.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 179280773 - 179306194

 Exon Info From UCSC:
NM_178042
NM_004301
NM_177989

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3050818Full LengthBC001391actin-like 6A
3445923Full LengthBC000949actin-like 6A
4827785Full LengthBC036371actin-like 6A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_817126  NP_004292  NP_829888  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004301 NP_004292 O96019 Actin
NM_177989 NP_817126   Actin
NM_178042 NP_829888   Actin

Related Sequences

 
mRNAGenPeptSwissProt
AF041474 AAC94991 O96019
BC000949 AAH00949 O96019
BC001391 AAH01391 O96019
BC036371 AAH36371 O96019
EU832370 ACE86855  
EU832285 ACE87542  
HQ448270 ADQ32750  
AB015907 BAA74577 O96019
AB060168 BAB87844 O96019
AB061315 BAB87848 O96019
AK223212 BAD96932 Q53FS0
AK021756 BAG51043 O96019
AL136608 CAB66543 O96019
Q6FI97
CR533529 CAG38560 Q6FI97

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ACTL6A NP_004292 M.musculus Actl6a 56456 Gene Info NP_062647 99
R.norvegicus Actl6a 361925   NP_001034122 99
D.melanogaster Bap55 36956   NP_611209 56
A.gambiae AgaP_AGAP008687 1275530   XP_314784 54
A.thaliana ARP4 838425   NP_564051 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta