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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NISCH, nischarin
Sequence ID:NM_007184
Entrez Gene ID:11188
Ensembl ID:ENSG00000010322

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 52489133 - 52527084

 Exon Info From UCSC:
NM_007184

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5268247Full LengthBC038102nischarin
6143316Full LengthBC056900nischarin
6195532Full LengthBC054494nischarin
5761683IncompleteBC050552nischarin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009115  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007184 NP_009115   LRR_1
PX

Related Sequences

 
mRNAGenPeptSwissProt
AF082516 AAC33104 Q9Y2I1
AF058290 AAC33321 Q9Y2I1
BC038102 AAH38102 Q9Y2I1
BC054494 AAH54494 Q9Y2I1
BC056900 AAH56900 Q9Y2I1
AB023192 BAA76819 Q9Y2I1
AK291398 BAF84087 Q9Y2I1
AK027331 BAG51306 B3KNE4
AK027428 BAG51321 B3KNF9
AK297657 BAG60023 B4DMW1
AK302441 BAG63739 B4DYH7
AL117432 CAB55920 Q9Y2I1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NISCH NP_009115 R.norvegicus Nisch 306255   XP_240330 90
C.elegans F13E9.1 177981   NP_502016 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)