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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYNGR3, synaptogyrin 3
Sequence ID:NM_004209
Entrez Gene ID:9143
Ensembl ID:ENSG00000127561

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 2040099 - 2044275

NM_004209 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
123520399672040201
23647320419742042211
47461620426362042778
617202820428632044274

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3932502Full LengthBC009568synaptogyrin 3
4334996Full LengthBC014087synaptogyrin 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004200  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004209 NP_004200 O43761 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
BC009568 AAH09568 Q96L30
BC014087 AAH14087 O43761
DQ892351 ABM83277  
DQ895555 ABM86481  
AK313894 BAG36617 O43761
AJ002309 CAA05326 O43761

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYNGR3 NP_004200 M.musculus Syngr3 20974 Gene Info NP_035652 94
R.norvegicus Syngr3 302975   NP_001100455 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)