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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VEGFC, vascular endothelial growth factor C
Sequence ID:NM_005429
Entrez Gene ID:7424
Ensembl ID:ENSG00000150630

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 177605084 - 177713665

NM_005429 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1391177604690177605080
392501177605084177605193
502835177608340177608673
836942177608974177609080
9431094177632652177632803
10951285177648931177649121
12861499177650686177650899
15002076177713318177713894

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4513934Full LengthBC063685vascular endothelial growth factor C
4753457Full LengthBC035212vascular endothelial growth factor C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005420  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005429 NP_005420 P49767 PDGF
CXCXC

Related Sequences

 
mRNAGenPeptSwissProt
U43142 AAA85214 P49767
U58111 AAB02909 P49767
BC035212 AAH35212 P49767
BC063685 AAH63685 P49767
DQ891162 ABM82088  
DQ893345 ABM84271  
DQ894481 ABM85407  
DQ896666 ABM87665  
AK313879 BAG36605 P49767
X94216 CAA63907 P49767
CR541897 CAG46695 Q6FH59

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VEGFC NP_005420 M.musculus Vegfc 22341 Gene Info NP_033532 86
R.norvegicus Vegfc 114111   NP_446105 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)