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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PDZRN3, PDZ domain containing ring finger 3
Sequence ID:NM_015009
Entrez Gene ID:23024
Ensembl ID:ENSG00000121440

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 73431651 - 73674072

NM_015009 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124307343165173434080
243125477343481973434935
254826497343711873437219
265027127343896673439028
271328117344016873440266
281228997345007273450159
290031477345329873453545
314832557365150473651611
325633427365774873657834
334341617367325373674071

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862525Full LengthBC152417PDZ domain containing ring finger 3
9056993Full LengthBC150623PDZ domain containing ring finger 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055824  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015009 NP_055824 Q9UPQ7 zf-C3HC4
PDZ
zf-TRAF

Related Sequences

 
mRNAGenPeptSwissProt
BC014432 AAH14432 Q9UPQ7
BC150623 AAI50624 B2RWP2
BC152417 AAI52418 Q9UPQ7
AB029018 BAA83047 Q9UPQ7
AK074573 BAC11068 Q9UPQ7
AK294761 BAH11874 B7Z2I8
AK299275 BAH12989 B7Z5Q3
AK299560 BAH13065 B7Z5X9
AK316244 BAH14615 B7ZAC9
AK316275 BAH14646 B7ZAG0
AL157498 CAB75679 Q9UPQ7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDZRN3 NP_055824 M.musculus Pdzrn3 55983 Gene Info NP_061372 95
R.norvegicus Pdzrn3 312607   XP_232226 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)