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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYNJ2, synaptojanin 2
Sequence ID:NM_001178088
NM_003898
RefSeqGene ID:NG_029907
Entrez Gene ID:8871
Ensembl ID:ENSG00000078269

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 158438266 - 158519568

 Exon Info From UCSC:
NM_001178088
NM_003898

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5297160Full LengthBC043277synaptojanin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003889  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001178088 NP_001171559      
NM_003898 NP_003889 O15056 EC 3.1.3.36 Syja_N
Exo_endo_phos

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF039945 AAD02178 O15056 EC 3.1.3.36
AF318616 AAG46036 O15056 EC 3.1.3.36
BC043277 AAH43277 O15056 EC 3.1.3.36
AY152396 AAN73051 O15056 EC 3.1.3.36
AB002346 BAA20805 O15056 EC 3.1.3.36
AK294480 BAG57705 B4DG94  
AK296242 BAG58960 B4DJU8  
AK296935 BAG59486 B4DLC4  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYNJ2 NP_003889 R.norvegicus Synj2 84018   NP_001106842 86
M.musculus Synj2 20975 Gene Info NP_001106824 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta