Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. FOXN3, forkhead box N3
Sequence ID:NM_001085471
Entrez Gene ID:1112
Ensembl ID:ENSG00000053254

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 89622525 - 89627743

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3028787Full LengthBC007506forkhead box N3
4215125IncompleteBC010460forkhead box N3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005188  

Protein Infomation

NM_001085471 NP_001078940 O00409  
NM_005197 NP_005188   Fork_head

Related Sequences

U68723 AAB58252 O00409
AF116643 AAF71066 Q9P1I8
BC007506 AAH07506 O00409
EU832063 ACE86725  
EU831970 ACE87411  
AK314098 BAG36793 Q9P1I8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens FOXN3 NP_001078940 M.musculus Foxn3 71375 Gene Info NP_899009 95
R.norvegicus Foxn3 314374   NP_001101517 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)