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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SSX1, Synovial sarcoma, X breakpoint 1
Sequence ID:NM_005635
RefSeqGene ID:NG_012528
Entrez Gene ID:6756
Ensembl ID:ENSG00000126752

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 48114806 - 48126879

NM_005635 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1714811479648114866
721604811665648116744
1612754811718048117294
2763714811797048118065
3724214812120048121249
4225574812321648123351
5586624812572148125825
66312534812628848126878

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3445470Full LengthBC001003synovial sarcoma, X breakpoint 1
6159943Full LengthBC128611synovial sarcoma, X breakpoint 1
40120550Full LengthBC133693synovial sarcoma, X breakpoint 1
40120554Full LengthBC125151synovial sarcoma, X breakpoint 1
40120555Full LengthBC150487synovial sarcoma, X breakpoint 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005635 NP_005626 Q16384  

Related Sequences

 
mRNAGenPeptSwissProt
BC001003 AAH01003 Q16384
BC125151 AAI25152 Q16384
BC128611 AAI28612 Q16384
BC133693 AAI33694 Q16384
BC150487 AAI50488 Q16384
DQ890973 ABM81899  
EU176571 ABW03372  
X86174 CAA60110 Q16384

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SSX1 NP_005626 M.musculus Ssxb6 668976   XP_001481300 48
M.musculus Ssxb2 387132 Gene Info NP_001001450 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)