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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BANF1, Barrier to autointegration factor 1
Sequence ID:NM_003860
NM_001143985
RefSeqGene ID:NG_031874
Entrez Gene ID:8815
Ensembl ID:ENSG00000175334

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 65769896 - 65771617

 Exon Info From UCSC:
NM_003860
NM_001143985

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4074168Full LengthBC005942barrier to autointegration factor 1
6495215Full LengthBC107702barrier to autointegration factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003851  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143985 NP_001137457    
NM_003860 NP_003851 O75531 BAF

Related Sequences

 
mRNAGenPeptSwissProt
AF044773 AAC08964 O75531
AF070447 AAC23575 O75531
AF068235 AAD15901 O75531
BC005942 AAH05942 O75531
BC107702 AAI07703 O75531
AK311961 BAG34901 B2R4V4
CR542140 CAG46937 O75531

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BANF1 NP_001137457 R.norvegicus Banf1 114087   NP_446083 97
M.musculus Banf1 23825 Gene Info NP_035923 97
A.gambiae AgaP_AGAP008753 1275609   XP_314872 72
D.melanogaster baf 34095   NP_609176 64
C.elegans baf-1 176330   NP_499085 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)