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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS11, ribosomal protein S11
Sequence ID:NM_001015
Entrez Gene ID:6205
Ensembl ID:ENSG00000142534

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 49999686 - 50002892

NM_001015 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1954999963349999727
962275000045050000581
2283035000077650000851
3044335000117350001302
4346095000276850002943

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3343839Full LengthBC007283ribosomal protein S11
3350204Full LengthBC007603ribosomal protein S11
3357773Full LengthBC010028ribosomal protein S11
4297932Full LengthBC007945ribosomal protein S11
4667201Full LengthBC016378ribosomal protein S11
4809182Full LengthBC070224ribosomal protein S11
30565084Full LengthBC100025ribosomal protein S11
4547934IncompleteBC010187ribosomal protein S11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001006  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001015 NP_001006 P62280 Ribosomal_S17

Related Sequences

 
mRNAGenPeptSwissProt
BC007283 AAH07283 P62280
BC007603 AAH07603 P62280
BC007945 AAH07945 P62280
BC010028 AAH10028 P62280
BC016378 AAH16378 P62280
BC070224 AAH70224 P62280
BC100025 AAI00026 P62280
DQ893225 ABM84151  
DQ896555 ABM87554  
AK311809 BAG34752 P62280
X06617 CAA29834 P62280

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS11 NP_001006 M.musculus Rps11 27207 Gene Info NP_038753 100
R.norvegicus Rps11 81774   NP_112372 100
A.gambiae RS11_ANOGA 1279424   XP_319141 77
D.melanogaster RpS11 36321   NP_725114 73
S.cerevisiae RPS11A 851589   NP_010308 73
S.cerevisiae RPS11B 852337   NP_009604 73
A.thaliana AT4G30800 829203   NP_194809 69
C.elegans rps-11 178083   NP_502186 68
P.falciparum PFC0775w 814490   XP_001351246 68
S.pombe rps1101 2543120   NP_594003 68
S.pombe rps1102 2542904   NP_594672 68
A.thaliana RPS11-BETA 832439   NP_197763 66
A.thaliana EMB1080 824054   NP_190462 65
N.crassa NCU03102 3881110   XP_964961 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)