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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPS17, ribosomal protein S17
Sequence ID:NM_001021
RefSeqGene ID:NG_009890
Entrez Gene ID:6218
Ensembl ID:ENSG00000184779

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q

Chromosomal Position (from UCSC)

Chromosomal Position:15: 82821208 - 82824860

NM_001021 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
271558282116082821288
1562218282271382822778
2223278282328782823392
3284798282438882824539
4805118282483382824864

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3882924Full LengthBC019899ribosomal protein S17
4068842Full LengthBC062715ribosomal protein S17
4334552Full LengthBC009407ribosomal protein S17
4738331Full LengthBC022370ribosomal protein S17
5090053Full LengthBC071928ribosomal protein S17
6212543Full LengthBC049824ribosomal protein S17
6738383Full LengthBC070222ribosomal protein S17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001012  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001021 NP_001012 P08708 Ribosomal_S17e
NM_001199057 NP_001185986    

Related Sequences

 
mRNAGenPeptSwissProt
M13932 AAA60284 P08708
BC009407 AAH09407 P08708
BC019899 AAH19899 P08708
BC022370 AAH22370 P08708
BC049824 AAH49824 P08708
BC062715 AAH62715 P08708
BC070222 AAH70222 P08708
BC071928 AAH71928 P08708
DQ893380 ABM84306  
DQ896701 ABM87700  
AK311951 BAG34891 P08708

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS17 NP_001012 H.sapiens RPS17L 100505503   NP_001185986 100
R.norvegicus LOC691975 691975   XP_001080507 93
D.melanogaster RpS17 39088   NP_524002 81
A.gambiae RS17_ANOGA 1275106   XP_314292 76
N.crassa NCU07014 3877983   XP_961835 75
S.pombe rps1701 2541229   NP_595245 71
S.cerevisiae RPS17B 852058   NP_010735 70
S.cerevisiae RPS17A 854984   NP_013688 70
S.pombe rps1702 2539331   NP_588012 69
A.thaliana AT2G05220 815070   NP_565320 63
A.thaliana AT2G04390 814978   NP_178520 62
A.thaliana AT5G04800 830359   NP_001031834 62
P.falciparum PFL2055w 811463   XP_001350815 62
A.thaliana AT3G10610 820230   NP_187672 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)