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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX11, SRY (sex determining region Y)-box 11
Sequence ID:NM_003108
Entrez Gene ID:6664
Ensembl ID:ENSG00000176887

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 5832798 - 5841517

NM_003108 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1871858327985841515

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100064151Full LengthBC160119SRY (sex determining region Y)-box 11
5201591IncompleteBC025789SRY (sex determining region Y)-box 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003099  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003108 NP_003099 P35716 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
U23752 AAB08518 P35716
BC025789 AAH25789 Q05CH0
BC160119 AAI60119  
AB028641 BAA88122 P35716

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX11 NP_003099 M.musculus Sox11 20666 Gene Info NP_033260 88
R.norvegicus Sox11 84046   NP_445801 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)